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java.lang.Object java.awt.Component java.awt.Container java.awt.Window java.awt.Frame javax.swing.JFrame IMPACT.GUIDialogs
public class GUIDialogs
Implementation of several dialog messages.
Nested Class Summary |
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Nested classes/interfaces inherited from class javax.swing.JFrame |
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javax.swing.JFrame.AccessibleJFrame |
Nested classes/interfaces inherited from class java.awt.Frame |
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java.awt.Frame.AccessibleAWTFrame |
Nested classes/interfaces inherited from class java.awt.Window |
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java.awt.Window.AccessibleAWTWindow |
Nested classes/interfaces inherited from class java.awt.Container |
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java.awt.Container.AccessibleAWTContainer |
Nested classes/interfaces inherited from class java.awt.Component |
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java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy |
Field Summary | |
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static int |
QUESTION_ASK
QUESTION_ASK: "Choose file format to save in:" |
static int |
QUESTION_CHOICE
QUESTION_CHOICE: "If the extension doesn't match the file format, please choose. Otherwise, choosing Cancel will try to get it through its extension." |
Fields inherited from class javax.swing.JFrame |
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accessibleContext, EXIT_ON_CLOSE, rootPane, rootPaneCheckingEnabled |
Fields inherited from class java.awt.Frame |
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CROSSHAIR_CURSOR, DEFAULT_CURSOR, E_RESIZE_CURSOR, HAND_CURSOR, ICONIFIED, MAXIMIZED_BOTH, MAXIMIZED_HORIZ, MAXIMIZED_VERT, MOVE_CURSOR, N_RESIZE_CURSOR, NE_RESIZE_CURSOR, NORMAL, NW_RESIZE_CURSOR, S_RESIZE_CURSOR, SE_RESIZE_CURSOR, SW_RESIZE_CURSOR, TEXT_CURSOR, W_RESIZE_CURSOR, WAIT_CURSOR |
Fields inherited from class java.awt.Component |
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BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT |
Fields inherited from interface javax.swing.WindowConstants |
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DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, HIDE_ON_CLOSE |
Fields inherited from interface java.awt.image.ImageObserver |
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ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH |
Constructor Summary | |
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GUIDialogs()
General case. |
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GUIDialogs(java.awt.Component parent)
Specific case. Parent component only in dialogs UTIL_BFF, UTIL_FEF and UTIL_FMF, used in initialization process. In other dialogs works like in general case constructor. |
Method Summary | |
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void |
showFFC_DSLF(java.lang.String formattxt,
java.lang.String seqdiff)
FileFormatConverter class. DSLF : Error_Message Different Sequence Lengths Found. |
void |
showFFC_FBF(java.lang.String formattxt)
FileFormatConverter class. FBF : Error_Message File Bad Format. |
void |
showFFC_FNC()
FileFormatConverter class. FNC : Error_Message Format Not Chosen... |
void |
showFFC_RSAOB(java.lang.String formattxt,
int seqcount,
java.lang.String aiobex)
FileFormatConverter class. RSAOB : Error_Message Reading Sequence Array Out Of Bounds |
void |
showFFC_VMPF()
FileFormatConverter class. VMPF : Error_Message Values Missing in Phylip File first line. |
void |
showGUI_EF(java.lang.String title,
java.lang.String addText)
GUI class. EF : Warning_Message Empty Fields. |
int |
showGUI_FAEM(java.lang.String title)
GUI class. FAEM : Question_Message File Already Exists Make new? |
void |
showGUI_FNE(java.lang.String title)
GUI class. FNE : Error_Message for File does Not Exist. |
void |
showGUI_FNE(java.lang.String filename,
java.lang.String title)
GUI class. FNE : Error_Message for File does Not Exist. |
void |
showGUI_FNO(java.lang.String title)
GUI class. FNO : Error_Message File Not Opened. |
void |
showGUI_IFPSV(java.lang.String filename,
java.lang.String program)
GUI class. PVENCF : Error_Message Incorrect File for Program Stat Values. |
void |
showGUI_PVCF()
GUI class. PVCF : Information_Message Please Verify Correct Format field. |
int |
showGUI_RCSC()
GUI class. RCSC : Warning_Message Run ConTest without Save Changes |
int |
showGUI_RE()
GUI class. RE : Question_Message Really Exit. |
int |
showGUI_RETR()
GUI class. REFQ : Question_Message Really Exit Tasks Running. |
int |
showGUI_REWO()
GUI class. REFQ : Question_Message Really Exit Windows Open. |
int |
showGUI_SFC()
GUI class. SFC : Question_Message Set File as Current ? |
int |
showGUI_UNMA()
GUI class. |
java.lang.String |
showGUIAE_CFF(java.lang.String[] formats,
int quest)
GUIAlignmentEditor class. CFF : Question_Message Choose File Format. |
int |
showGUIAE_FAEO(java.lang.String title)
GUIAlignmentEditor class. FAEO : Question_Message File Already Exists Overwrite? |
void |
showGUIAE_FENF(java.lang.String title)
GUIAlignmentEditor class. FENF : Error_Message File Extension Not Found. |
void |
showGUIAE_FS(java.lang.String filesaved)
GUIAlignmentEditor class. FS : Information_Message File Saved. |
void |
showGUIAE_PONC()
GUIAlignmentEditor class. PONC : Error_Message PhyML Options Not Chosen. |
int |
showGUIAE_RPSC()
GUIAlignmentEditor class. RPSC : Warning_Message Run PhyML without Save Changes |
void |
showGUICP_DC(java.lang.String text)
GUIConfPreferences class. DC : Information_Message Directory Created. |
void |
showGUICP_IURL(java.lang.String err)
GUIConfPreferences class. IURL : Error_Message Invalid URL. |
void |
showGUICP_NPAF()
GUIConfPreferences class. NPAF : Error_Message Not Propert AAIndex1 file. |
void |
showGUICP_PW()
GUIConfPreferences class. PW : Plain_Message Please Wait. |
void |
showGUICP_UOK(java.lang.String text)
GUIConfPreferences class. UOK : Information_Message URL OK. |
void |
showGUICP_URNE()
GUIConfPreferences class. URNE : ERROR_Message URL Resource does Not Exist. |
java.lang.String |
showGUIFFC_CPFT(java.lang.String[] pformats)
GUIFileFormatConverter class. CPFT : Question_Message Choose Phylip Format Type |
int |
showGUIRS_NSS(java.lang.String title)
ResultsSummary class. NSS : Warning_Message No Selected Sequences. |
void |
showRS_FBF()
ResultsSummary class. FBF : Error_Message File Bad Format. |
void |
showRS_SCNF()
ResultsSummary class. SCNF : Error_Message Selected Column Not Found. |
void |
showRV_RCAOB(java.lang.String flname,
int csvrow,
java.lang.String aiobex)
ResultsView class. RCAOB : Error_Message Reading CSV file Array Out Of Bounds |
void |
showUTIL_BFF(java.lang.String file,
java.lang.String errorline)
Utilities class. BFF : Error_Message Bad File Format. |
void |
showUTIL_FEF(java.lang.String program_file,
int nummsg)
Utilities class. FEF: Warning_Message File with Empty Fields. |
void |
showUTIL_FMF(java.lang.String program_file)
Utilities class. FMF : Warning_Message File with Missing Fields. |
void |
showUTIL_FNF(java.lang.String program_file)
Utilities class. FNF: Warning_Message File Not Found. |
void |
showUTIL_GWL(java.lang.String rightLoc)
Utilities class. GWL : Error_Message GUI in Wrong Location |
void |
showUTIL_IOF()
Utilities class. COF : Error_Message Incorrect Options File syntax. |
void |
showUTIL_NAF(java.lang.String aai1Name)
Utilities class. NAF : Error_Message Not an AAIndex1 File. |
Methods inherited from class javax.swing.JFrame |
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addImpl, createRootPane, frameInit, getAccessibleContext, getContentPane, getDefaultCloseOperation, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isDefaultLookAndFeelDecorated, isRootPaneCheckingEnabled, paramString, processWindowEvent, remove, repaint, setContentPane, setDefaultCloseOperation, setDefaultLookAndFeelDecorated, setGlassPane, setIconImage, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update |
Methods inherited from class java.awt.Frame |
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addNotify, getCursorType, getExtendedState, getFrames, getIconImage, getMaximizedBounds, getMenuBar, getState, getTitle, isResizable, isUndecorated, remove, removeNotify, setCursor, setExtendedState, setMaximizedBounds, setMenuBar, setResizable, setState, setTitle, setUndecorated |
Methods inherited from class java.awt.Window |
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addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, dispose, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getGraphicsConfiguration, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOwnedWindows, getOwner, getOwnerlessWindows, getToolkit, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, hide, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isShowing, pack, paint, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImages, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setVisible, show, toBack, toFront |
Methods inherited from class java.awt.Container |
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add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusBackward, transferFocusDownCycle, validate, validateTree |
Methods inherited from class java.awt.Component |
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action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isOpaque, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resize, resize, setBackground, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setLocation, setLocation, setMaximumSize, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusUpCycle |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait |
Methods inherited from interface java.awt.MenuContainer |
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getFont, postEvent |
Field Detail |
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public static final int QUESTION_CHOICE
showGUIAE_CFF(java.lang.String[], int)
,
Constant Field Valuespublic static final int QUESTION_ASK
showGUIAE_CFF(java.lang.String[], int)
,
Constant Field ValuesConstructor Detail |
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public GUIDialogs()
public GUIDialogs(java.awt.Component parent)
parent
- in this specific case normally its value is GUIInitializeBox object.GUIInitializationBox
Method Detail |
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public void showGUI_FNE(java.lang.String title)
title
- public void showGUI_FNE(java.lang.String filename, java.lang.String title)
filename
- specify name of nonexistent file.title
- public void showGUI_FNO(java.lang.String title)
title
- dialog title.public int showGUI_SFC()
public void showGUI_PVCF()
public int showGUI_RCSC()
public void showGUI_EF(java.lang.String title, java.lang.String addText)
title
- dialog title.addText
- specify which fields are empty; or set to empty string.public void showGUI_IFPSV(java.lang.String filename, java.lang.String program)
filename
- incorrect file.program
- program of corresponding file.public int showGUI_RE()
public int showGUI_RETR()
public int showGUI_REWO()
public int showGUI_UNMA()
public int showGUI_FAEM(java.lang.String title)
title
- dialog title.
public java.lang.String showGUIAE_CFF(java.lang.String[] formats, int quest)
formats
- file formats.quest
- decide which question to use. Values: QUESTION_CHOICE, QUESTION_ASK.
public int showGUIAE_FAEO(java.lang.String title)
title
- dialog title.
public void showGUIAE_FENF(java.lang.String title)
title
- dialog title.public void showGUIAE_FS(java.lang.String filesaved)
filesaved
- name of saved file.public void showGUIAE_PONC()
public int showGUIAE_RPSC()
public void showGUICP_DC(java.lang.String text)
text
- Information message.public void showGUICP_URNE()
public void showGUICP_UOK(java.lang.String text)
text
- Information message.public void showGUICP_IURL(java.lang.String err)
err
- java exception.public void showGUICP_PW()
public void showGUICP_NPAF()
public java.lang.String showGUIFFC_CPFT(java.lang.String[] pformats)
pformats
- array with values Classic/Extended.
public void showFFC_VMPF()
public void showFFC_FNC()
public void showFFC_RSAOB(java.lang.String formattxt, int seqcount, java.lang.String aiobex)
formattxt
- format where reading is taking place.seqcount
- sequence number identifying sequence where error ocurred.aiobex
- java error.public void showFFC_FBF(java.lang.String formattxt)
formattxt
- format where reading is taking place.public void showFFC_DSLF(java.lang.String formattxt, java.lang.String seqdiff)
formattxt
- format where reading is taking place.seqdiff
- number of differing sequences.public void showRV_RCAOB(java.lang.String flname, int csvrow, java.lang.String aiobex)
flname
- file name where reading is taking place.csvrow
- csv row number identifying where error ocurred.aiobex
- java error.public int showGUIRS_NSS(java.lang.String title)
title
- dialog title.
public void showRS_FBF()
public void showRS_SCNF()
public void showUTIL_FNF(java.lang.String program_file)
program_file
- public void showUTIL_FEF(java.lang.String program_file, int nummsg)
program_file
- file with empty fields.nummsg
- value 0 or other.public void showUTIL_IOF()
public void showUTIL_BFF(java.lang.String file, java.lang.String errorline)
file
- File giving errors.errorline
- line that produced error.public void showUTIL_FMF(java.lang.String program_file)
program_file
- file with error.public void showUTIL_GWL(java.lang.String rightLoc)
rightLoc
- Correct location for jar archive.public void showUTIL_NAF(java.lang.String aai1Name)
aai1Name
- (incorrect) AAIndex1 file name.
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