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Class Summary | |
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AlignmentEditor | Implementation of methods and data structures for GUIAlignmentEditor. |
ConTestTask | Implementation of background task for ConTest execution. |
CSVTableModel | Implementation of specific Table Model for Comma Separated Values files. |
FileFormatConverter | Implementation of functions to read/write several formats of MSA files. |
GenericJarTask | Implementation of background task to run any java (jar) program file. Used for A Tree Viewer (ATV) and Jmol programs. |
GUI | Implementation of IMPACT, main. |
GUIAboutBox | Implementation of an About box for menu Help. |
GUIAlignmentEditor | Implementation of MSA Editor / Viewer, also topology (re)estimation through PhyML. |
GUIConfPreferences | Implementation of IMPACT Preferences. Configuration and management of several paths. |
GUIDialogs | Implementation of several dialog messages. |
GUIFileChooser | Implementation of a File Chooser. |
GUIFileFormatConverter | Implementation of MSA File Format Converter. Supports conversion between formats like Mase, Fasta, Clustal and Phylip |
GUIInitializationBox | Implementation of a user debbuging box, for GUI initialization. |
GUIPhyMLOptions | Implementation of PhyML Options selection. |
GUIProgExecOutput | Implementation of external program execution output viewer. |
GUIResultsSummary | Implementation of options to provide for producing summary of results. |
GUIResultsView | Implementation of Comma Separated Values (CSV) format files viewer. |
MSAColumnColorRenderer | Implementation of specific Table Cell Renderer for presenting selected columns in MSA table. |
MSATableModel | Implementation of specific Table Model for Multiple Sequence Alignments. |
PhyMLTask | Implementation of a background task for PhyML execution. |
ResultsSummary | Implementation of several methods to present a summary of results. These are based in R output file, MSA file, and 3D location (created by user). |
ResultsView | Implementation of several methods to allow reading Comma Separating Values (CSV) files. |
RSoftwareTask | Implementation of background task to run R scripts. |
Utilities | Implementation of various methods and data structures needed across IMPACT package. |
ViewerTask | Implementation of background task to run PDF/PS viewer. |
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