Uses of Class
IMPACT.Utilities

Uses of Utilities in IMPACT

Methods in IMPACT that return Utilities

Utilities

GUIConfPreferences.getUtil() Get updated utilities.

Methods in IMPACT with parameters of type Utilities

void	AlignmentEditor.removeCanceledTMPFls(Utilities util, java.lang.String newTreeFile, boolean selected) Remove temporary files created for PhyML execution resulting from cancelation.
java.lang.String[]	AlignmentEditor.renamePhymlFiles(Utilities util, java.lang.String newTreeFile, boolean selected) Rename PhyML files created on directory Phylogeny to name specified by user.

Constructors in IMPACT with parameters of type Utilities

GUIAboutBox(Utilities utilities)
Creates new form GUIAboutBox

GUIAlignmentEditor(java.io.File seqfile, java.lang.String flFormat, java.lang.String treeFile, Utilities utilities)
Creates new form GUIAlignmentEditor

GUIConfPreferences(Utilities utilities)
Creates new form GUIConfPreferences

GUIFileFormatConverter(Utilities utilities)
Creates new form GUIFileFormatConverter

GUIPhyMLOptions(Utilities utilities)
Creates new form GUIPhyMLOptions

GUIResultsSummary(java.lang.String msaFile, java.lang.String msaFormat, java.lang.String csvRFile, java.lang.String outputfl, Utilities utilities)
Creates new form GUIResultsSummary

GUIResultsView(java.lang.String file0, java.lang.String file1, java.lang.String distLbl, Utilities utilities)
Creates new form GUIResultsView

ResultsSummary(java.lang.String msaFile, java.lang.String msaFormat, java.lang.String csvRFile, java.lang.String domFile, java.lang.String outpFile, Utilities utilities)
Initialize results summary.